Module 3.1 Blast, in silicone MLST and gene annotation (outline)
Blast, in silico MLST and gene annotation
Time
| Activity description
| ILOs |
13-15
| Lecture/Practical: “Blast, in-silico MLST and gene annotation” |
|
15-16.30 | Coding session: Free! |
|
Details
In this session, the trainees will get started on how to gain some functional insights from their data. Blast will be introduced as a central tool for collecting information about unknown sequences, as well as comparing sequences to each other. The trainees will also be introduced to the basics of genome annotation and start to explore the functional repertoire of the bacterial genomes they have assembled.
At the end of the day, the trainees will have the possibility to decide the activity based on their own learning needs. For example, the time-slot can be used to catch up on practicals, ask questions to the trainers, read-up on documentation, or practice coding. Coding tasks will be provided as inspiration if needed.