Participants
Training materials for facilitators
Overview
Training Materials
FileOnline orientation session for participants (2 we...
PagePre-course activity
PageModule 1.1 Course introduction (outline)
FolderModule 1.1 materials
PageModule 1.2 Introduction to Linux and Bash (outline)
FolderModule 1.2 materials
PageModule 1.3 Getting started with python (outline)
FolderModule 1.3 materials
PageModule 1.4a Advancing in programming 2024 (outline)
FolderModule 1.4a materials
PageModule 1.4b Coding best practice 2023 (outline)
FolderModule 1.4b materials
PageModule 2.1 Sequencing and raw-data QC (outline)
FolderModule 2.1 materials
PageModule 2.2 Introduction to genome assembly (outline)
FolderModule 2.2 materials
PageModule 2.3a Short-read genome assembly and QC 2024
FolderModule 2.3a materials
PageModule 2.3b Reference-based assembly 2023 (SARS-Co...
FolderModule 2.3b materials
PageModule 2.4 Long-read and hybrid de novo genome ass...
FolderModule 2.4 materials
PageModule 3.1 Blast, in silicone MLST and gene annota...
FolderModule 3.1 materials
PageModule 3.2 - Getting started with phylogenies (out...
FolderModule 3.2 materials
PageModule 3.3a - Pathogen-wave oriented analyses 2023...
FolderModule 3.3a materials
PageModule 3.3b - Pathogen-wave oriented analyses 2024...
FolderModule 3.3b materials
PageModule 3.4 - Data sharing (outline)
FolderModule 3.4 materials
PageModule 3.5 Online tools for genetic analysis (outl...
FolderModule 3.5 materials
PageModule 4.1 Pipeline development (outline)
FolderModule 4.1 materials
PageModule 4.2 Automation – going large-scale (outline)
FolderModule 4.2 materials
PageModule 5.1 - What's next (outline)
Fileoutlook continued learning
FolderAdditional Resources - Scripts developed by trainers
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