Module 3.4 - Data sharing (outline)
Theme 3: Genome analysis and sharing
Data sharing
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Time |
Activity description |
ILOs
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9.00-9.45 |
Lecture: “Introduction to data sharing and main data repositories (ENA, NCBI, GISAID)” |
· Understand the importance of realtime sharing of sequence data nationally, internationally and across sectors · Know the principles of fair data sharing (Nagoya protocol) · Understand the differences and pros/cons of restricted-access (e.g. GISAID) vs public access repositories (e.g. ENA and NCBI) · Describe the type of data that can be uploaded/downloaded to/from ENA/NCBI/GISAID |
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9.45-11.00 |
Demo/Practical: “Sharing sequence data to ENA” |
· Upload data to ENA using the interactive mode and command line |
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11.15-12.00 |
Practical: “Retrieving data from public repositories” |
· Search and retrieve data from ENA and other public repositories | ||
Details
In this module, the participants will learn about the different approaches to data sharing and the importance of making data available in real-time for epidemic surveillance and control. After a brief introduction, the participants will have the opportunity to make a test submission to a public data repository and get familiar with online data query and retrieval.