Influenza

Courses tagged with "Influenza"

This is a common space to all nominated participants of any training activity of the AURORAE Training Programme 2022-2025.

The overall objectives of the AURORAE trainings are to support countries in building capacities in the areas of diagnosis, detection, identification and characterisation of primarily influenza and SARS-CoV-2 viruses. Courses may include topics like diagnostic methods, molecular typing, sampling strategies for disease surveillance and for detection, use and limitation of test methods, testing strategies, test interpretation, bioinformatics, biosafety issues, shipment of infectious material, quality assurance, as well as capacity gaps identified through EQAs and/or surveys.
The training formats include face-to-face training courses (wetlab and drylab), twinning visits of various durations, and virtual trainings (webinars, instructive videos, self-paced online trainings). 

It contains links to training events and to the respective training materials. Click here to read more about AURORAE.

Experts of twelve institutes from eight European countries together were awarded a new framework contract by the ECDC in 2022, to provide "support to microbiology-related activities and capacity building focusing on COVID-19 and influenza in the EU/EEA, the Western Balkans and Türkiye. Laboratory support, training, and standardisation”. The consortium was named AURORAE (lAboratory sUppoRt fOr influenza and SARS coRonAvirus 2 for Europe) and activities started on 23rd June 2022 and will run over a four year period.

The Consortium is coordinated by National Institute for Public Health and the Environment (RIVM), Netherlands. The project coordinator is Adam Meijer (RIVM, Netherlands). 

AURORAE is composed of the following institutes:
  • Sciensano (SCIN), Belgium
  • Institut Pasteur (IP), France
  • Hospices Civils de Lyon (HCL), France
  • Charité – Universitätsmedizin Berlin (CU), Germany
  • Robert Koch-Institute (RKI), Germany
  • Aristotle University of Thessaloniki (AUTH), Greece
  • Hellenic Pasteur Institute (HPI), Greece
  • Laboratoire National de Santé (LNS), Luxembourg
  • National Institute for Public Health and the Environment (RIVM), Netherlands
  • Erasmus University Medical Center Rotterdam (EMC), Netherlands
  • Norwegian Institute of Public Health (NIPH), Norway
  • National Institute of Health Dr. Ricardo Jorge (INSA), Portugal


This virtual training workshop is part of the Genetic Epidemiology and Bioinformatics Training Programme (GenEpi-BioTrain). It's organised as part of Wave 1 dedicated to Influenza and SARS-CoV-2. 

The aim of this virtual training is to introduce public health participants to theoretical and practical aspects of analysing avian influenza sequence data from single samples in a one health approach. Participants will get insights on NGS data analysis (including data quality control) and genotyping, and their use in the context of avian influenza outbreak investigations.


Duration: Two half-days on 20 and 24 November 2023 from 10:00 to 13:30 (CET)


Location: Online - Find the link after enrolment. 


Audience: Public health microbiologists and bioinformaticians interested in analysing avian influenza sequence data from single samples in the context of outbreak investigations from a one health perspective. The practical exercise is targeted to those who are familiar with Unix command line interface and have access to a terminal.


Objectives:  

Upon completion of this workshop, participants will be able to:

  • Summarise the importance of NGS data in the context of avian influenza outbreaks investigations.
  • Describe the basic steps for analysis and quality control of avian influenza NGS data.
  • Conduct a basic analysis of avian influenza NGS data to generate consensus sequences.
  • Determine the samples’ genotypes using command line-based tools. 


Participation: The recordings of this course are open for public enrolment.

The course is designed as an unmoderated, self-paced course, i.e. participants can set their own schedule. The different sections of the course are intended to be taken sequentially, but the course does not need to be completed all at once.


Duration: 2 to 3 hours.


Audience: Public health professionals, laboratory scientists, epidemiologists working on influenza surveillance.


Objectives: This course aims to enhance knowledge of the basic bioinformatics tools available for the analysis of sequencing data and of the interpretation, comparison and analysis of influenza sequence data, with a focus on haemagglutinin and neuraminidase genes. Upon completion of the course, the participant will be able to: 

  • Understand Sanger and Next Generation Sequencing data analysis pipelines for HA and NA gene sequences; 
  • Retrieve sequences from public databases (GISAID and Genbank);
  • Understand HA and NA gene sequence alignments, mutations and SNP analysis for resistance (BioEdit); 
  • Use phylogeny software: basic concepts and instructions for phylogenetic analysis (MEGA); 
  • Visualise and annotate phylogenetic trees.


Participation: This course is open for public enrolment.


Introduction

This online course has been developed since seasonal influenza vaccination of health care workers (HCWs) is recommended in Europe but vaccination uptake remains low in most countries. During the course information about influenza disease, protection against influenza, tools to assess vaccine uptake and barriers to vaccination as well as stimulating examples of successful campaigns will be presented.


Duration: 2-3 hours


Audience: Health promoters.


Objectives: It is our hope that a community of vaccination campaign organisers will be built in Europe that can help inspire each other to create informative and effective seasonal influenza vaccination campaigns year after year.


Participation: This course is open for public enrolment


This Exercise is a Functional Exercise (FX) created in 2012.

The aim of the exercise was to test the Public Health Emergency Operation Plan (PHEOP) management system (including the intranet and supporting documents) in order to evaluate and refine it.

The exercise objectives were to:

  1. Test the PHEOP including PHE Management Structure.
  2. Test the command structure during PHE levels 1 and 2.
  3. Test the escalation to PHE level 2. Test all the relevant Standard Operating Procedures (SOPs).
  4. Test the use of checklists, job action sheets, log, report templates, minute templates and the rapid risk assessment template.
  5. Test the new PHE intranet system.
  6. Test the Business Continuity Plan (BCP) to allow for routine epidemic intelligence and response duties to continue during a PHE level 2 event.
  7. Test internal and external communications during a PHE.
  8. Test BC arrangements during a PHE.

Duration: 2 days (17 hours)

Related keywords: Measles, H5N1, Public Health Emergency management, Standard Operation Procedures, Epidemic Intelligence, Polio, ECDC.

This exercise is a Functional Exercise (FX) created in the 2009.

The overarching aim of the exercise was to explore ECDC’s ability to communicate about early detection and risk assessment, with Member States (MS) and international partners in a public health event at a mass gathering.

The overarching objectives of this exercise were:

  1. To test the internal and external communications between ECDC’s Emergency Operations Centre (EOC) and the equivalent structures of emergency centres in participating countries and organisations through tools, communications systems and equipment.
  2. Test the ECDC Public Health Event Operation Plan (PHEOP) up to Level 2, including staff planning, rotation, handover and support arrangements.
  3. Test the mass gathering algorithm currently under development by EpiConcept at National level.

Duration: 2 days (30 hours)

Related keywords: mass gathering events, public health events, H1N1, Flu, Legionella pneumophila, EOC, International communications.

Duration: 30 minutes 

👥 Audience: Health workers and other stakeholders involved in preventing and treating influenza 

🎯 Objectives: This course provides an overview of the tools to prevent and control influenza 


 Photo credits: WHO

Duration: 14 hours 

👥 Audience: This course is for public health practitioners and laboratorians. 

🎯 Objectives: Participants learn what kinds of data to collect from influenza patients and patient specimens, and the methods of collecting these data. Participants also learn how to analyse, summarise, report, present, and interpret data collected within a sentinel influenza surveillance system.


 Photo credits: WHO

Duration: 1 hour 

🎯 Objectives: Participants can expect to be exposed to the list of list the core ideas and principles for emergency risk communication for an influenza event, and describe steps to take to prepare for risk communication. 

 Photo credits: WHO